Illumina HiSeq 2000 paired end sequencing; pedonculate oak rep2 - SRA

ERX1086391: Illumina HiSeq 2000 paired end sequencing; pedonculate oak rep2
1 ILLUMINA (Illumina HiSeq 2000) run: 54M spots, 10.8G bases, 6.6Gb downloads

Design: pedunculate Oak (Quercus robur L.) stem 6 weeks Lat. 44°33’33’’ N, Long -0°96’66’’W

Submitted by: GSC (Genoscope)

Study: Adaptation to waterlogging in european white oaks

PRJEB10691 • ERP011977 • All experiments • All runs

show Abstracthide Abstract

The objective of this study was to identify the molecular mechanism involved both in hypertrophied lenticels formation and in the adaptation to waterlogging in european white oaks. To reach these objectives, seedling from both species (pedunculate vs. sessile) were subjected to waterlogging by maintaining the water table level up to 2cm above the collar. The portion of the immerged stem (i.e containing the hypertrophied lenticels in pedunculated oaks) was then sampled after 9 days of stress and characterized using a RNAseq approach

Sample:

SAMEA3528421 • ERS835570 • All experiments • All runs

Organism: Quercus robur

Library:

Name: BGC_BOSW_r1

Instrument: Illumina HiSeq 2000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Construction protocol: none provided

Spot descriptor:

1 forward102 reverse

Runs: 1 run, 54M spots, 10.8G bases, 6.6Gb

Run	# of Spots	# of Bases	Size	Published
ERR1007368	53,963,154	10.8G	6.6Gb	2016-01-20

ID:: 2173353

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Recent activity